ONTOLOGY SOURCE REFERENCE
Term Source Name	UO	OBI	NCBITAXON	OMIM	NCIT
Term Source File	http://data.bioontology.org/ontologies/UO	http://data.bioontology.org/ontologies/OBI	http://data.bioontology.org/ontologies/NCBITAXON	http://data.bioontology.org/ontologies/OMIM	http://data.bioontology.org/ontologies/NCIT
Term Source Version	220	51	22	24	135
Term Source Description	Units of Measurement Ontology	Ontology for Biomedical Investigations	National Center for Biotechnology Information (NCBI) Organismal Classification	Online Mendelian Inheritance in Man	National Cancer Institute Thesaurus
INVESTIGATION
Investigation Identifier	""
Investigation Title	{{cookiecutter.investigation_title}}
Investigation Description	""
Investigation Submission Date	""
Investigation Public Release Date	""
Comment[Created With Configuration]	/path/to/isa-configurations/bih_studies/bih_cancer
Comment[Last Opened With Configuration]	bih_cancer
INVESTIGATION PUBLICATIONS
Investigation PubMed ID
Investigation Publication DOI
Investigation Publication Author List
Investigation Publication Title
Investigation Publication Status
Investigation Publication Status Term Accession Number
Investigation Publication Status Term Source REF
INVESTIGATION CONTACTS
Investigation Person Last Name
Investigation Person First Name
Investigation Person Mid Initials
Investigation Person Email
Investigation Person Phone
Investigation Person Fax
Investigation Person Address
Investigation Person Affiliation
Investigation Person Roles
Investigation Person Roles Term Accession Number
Investigation Person Roles Term Source REF
STUDY
Study Identifier	{{cookiecutter.s_file_name}}
Study Title	{{cookiecutter.investigation_title}}
Study Description	""
Comment[Study Grant Number]	""
Comment[Study Funding Agency]	""
Study Submission Date	""
Study Public Release Date	""
Study File Name	s_{{cookiecutter.s_file_name}}.txt
STUDY DESIGN DESCRIPTORS
Study Design Type
Study Design Type Term Accession Number
Study Design Type Term Source REF
STUDY PUBLICATIONS
Study PubMed ID
Study Publication DOI
Study Publication Author List
Study Publication Title
Study Publication Status
Study Publication Status Term Accession Number
Study Publication Status Term Source REF
STUDY FACTORS
Study Factor Name
Study Factor Type
Study Factor Type Term Accession Number
Study Factor Type Term Source REF
STUDY ASSAYS
Study Assay File Name	a_{{cookiecutter.s_file_name}}_{{cookiecutter.__assay_name}}.txt{% if cookiecutter.is_triplet == True %}	a_{{cookiecutter.s_file_name}}_transcriptome_profiling.txt{% endif %}
Study Assay Measurement Type	{{cookiecutter.measurement_type}}{% if cookiecutter.is_triplet == True %}	transcriptome profiling{% endif %}
Study Assay Measurement Type Term Accession Number	""{% if cookiecutter.is_triplet == True %}	http://purl.obolibrary.org/obo/OBI_0000424{% endif %}
Study Assay Measurement Type Term Source REF	""{% if cookiecutter.is_triplet == True %}	OBI{% endif %}
Study Assay Technology Type	nucleotide sequencing{% if cookiecutter.is_triplet == True %}	nucleotide sequencing{% endif %}
Study Assay Technology Type Term Accession Number	http://purl.obolibrary.org/obo/OBI_0000626{% if cookiecutter.is_triplet == True %}	http://purl.obolibrary.org/obo/OBI_0000626{% endif %}
Study Assay Technology Type Term Source REF	OBI{% if cookiecutter.is_triplet == True %}	OBI{% endif %}
Study Assay Technology Platform	Illumina{% if cookiecutter.is_triplet == True %}	Illumina{% endif %}
STUDY PROTOCOLS
Study Protocol Name	Sample collection	Nucleic acid extraction	Library construction	Nucleic acid sequencing
Study Protocol Type	Sample collection	Nucleic acid extraction	Library construction	Nucleic acid sequencing
Study Protocol Type Term Accession Number	""	""	""	""
Study Protocol Type Term Source REF	""	""	""	""
Study Protocol Description	""	""	""	""
Study Protocol URI	""	""	""	""
Study Protocol Version	""	""	""	""
Study Protocol Parameters Name	"Conservation method"	Concentration measurement	"Provider project ID;Library source;Library selection;Library layout;Barcode sequence;Wet-lab insert size;Requestor contact;Library kit;Library kit catalogue ID;{% if cookiecutter.is_triplet == True %}Library strand specificity;{% endif %}Provider contact;Concentration measurement;Provider sample ID;Target insert size;Provider name;Requestor project;Requestor sample ID;Barcode kit;Barcode kit catalogue ID;Barcode name;Provider QC status;Library strategy"	"Base quality encoding;Platform;Center contact;Target read length;Target read length (mate 2);Instrument model;Center name"
Study Protocol Parameters Name Term Accession Number	""	""	";;;;;;;;;;;;;;;;;;;;{% if cookiecutter.is_triplet == True %};{% endif %}"	";;;;;;"
Study Protocol Parameters Name Term Source REF	""	""	";;;;;;;;;;;;;;;;;;;;{% if cookiecutter.is_triplet == True %};{% endif %}"	";;;;;;"
Study Protocol Components Name	""	""	""	""
Study Protocol Components Type	""	""	""	""
Study Protocol Components Type Term Accession Number	""	""	""	""
Study Protocol Components Type Term Source REF	""	""	""	""
STUDY CONTACTS
Study Person Last Name
Study Person First Name
Study Person Mid Initials
Study Person Email
Study Person Phone
Study Person Fax
Study Person Address
Study Person Affiliation
Study Person Roles
Study Person Roles Term Accession Number
Study Person Roles Term Source REF
